KETAKI GHATOLE
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Hi there!
I am a Bioinformatics Data Analyst working at Creyon Bio, San Diego. Prior to this, I obtained my master's in Computational Biology from Carnegie Mellon University.
My research interests lie in the applications of computational and machine-learning methods in Oncology, and RNA biology. Additionally, I bring a unique perspective to the table, having worked at the intersection of life sciences and business.
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I am eager to contribute to the life sciences industry and make a meaningful impact on human health. Feel free to reach out for collaborations, ideas or just to chat
EXPERIENCE
EXPERIENCE
Data Analyst
Building scalable bioinformatics pipeline and ML models to extracting meaningful insights
Computational biology intern
Provided analytical support including DE analysis, WGBS, Spatial transcriptomic alnalyses to researchers
Computational Science intern
Analyzed e-CLIP data to develop a web-based application to predict and visualize potential RNA binding motifs​
Junior Analyst
Automated the data collection to perform competitive landscape for emerging therapeutic agents in Oncology
PROJECTS
MACHINE LEARNING
Lung Cancer Classifier
Multi-omic analyses for Lung Cancer classification using Autoencoders, SVM, and Random Forest
Malaria detector
Detected malaria parasites in blood smear images using transfer learning with the ResNet50 architecture
Glioma classifier
Glioma Classification using four supervised multiclass classifiers based on gene expression data
BIOINFORMATICS
Variant Calling
Pipeline to identify SNPs and indels in paired-end sequencing data using GATK
RBP Peak Finder
Developed a pipeline to process e-CLIP data from ENCORE and obtain the peaks
Codon Usage Bias
Evaluated the amino acid preferences and codon usage patterns for a given sequence
PUBLICATIONS
Biofiltration techniques in the remediation of hazardous inorganic and organic contaminants. An Innovative Role of Biofiltration in Wastewater Treatment Plants, Elsevier - 2022
Molecular marker analysis of Oryza sativa using RAPD markers. International Journal of Advance Research, Ideas, and Innovations in Technology - 2019
Mobile Phones– Do We Need Decontamination? Journal of Evidence Based Medicine and Healthcare - 2018